Plot graph of neighbourhood

Visualize graph of neighbourhoods

plotNhoodGraph(x, layout = "UMAP", colour_by = NA, subset.nhoods = NULL, ...)

Arguments

x	A Milo object
layout	this can be (a) a character indicating the name of the reducedDim slot in the Milo object to use for layout (default: 'UMAP') (b) an igraph layout object
colour_by	this can be a data.frame of milo results or a character corresponding to a column in colData
subset.nhoods	A logical, integer or character vector indicating a subset of nhoods to show in plot (default: NULL, no subsetting)
...	arguments to pass to ggraph

Value

a ggplot-class object

Examples

NULL
#> NULL